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Page history last edited by PBworks 17 years, 2 months ago

Cistrome Meeting Schedule


8:30am Breakfast and Setup


9:00am Opening Remarks


9:10am ChIP-chip Protocol Panel Discussion (technical details and QC issues at each step)

  • Moderator: Jay Carroll in Brown Lab
  • Alex Brodsky
  • Annie Yang in Struhl lab
  • Keith Orford in Scadden Lab
  • Technical representative from Affymetrix (Victor Sementchenko), NimbleGen (Xinmin Zhang) and Agilent (Heather Plasterer)


10:50am Coffee Break


11:20am Sample processing and data analysis:

  • Ed Fox
  • Wei Li in Liu Lab


12:15pm Lunch Break


12:45pm Sponsor Presentations (data quality, reproducibility, cost, etc)


1:45pm ChIP-chip discoveries on different platforms

  • Steven Vokes in McMahon Lab (Agilent): Genomic characterization of Gli transcriptional targets in a sonic hedgehog-mediated neural patterning response
  • Qianben Wang in Brown Lab (Affymetrix): Non-Canonical responsive elements and multiple collaborating transcription factors are required for androgen-dependent transcription
  • Art Alekseyenko in Kuroda Lab (NimbleGen): High resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome.


3:00pm Coffee Break


3:30pm Discussions

  • Alternative analysis algorithms
  • Cistrome wish list, Shirley Liu



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